Browser Select Tracks Snapshots Custom Tracks Preferences

 Search

 Search

Landmark or Region: Examples: scaffold_1:1100001..1150000.

Annotate VISTA Plot: A. coerulea v.1.0 Annotate VISTA Plot: A. lyrata v.1.0 Annotate VISTA Plot: A. thaliana (TAIR9) Annotate VISTA Plot: Apple v.1.0 Annotate VISTA Plot: C. clementina v.1.0 Annotate VISTA Plot: C. papaya Annotate VISTA Plot: C. sativus v.1 Annotate VISTA Plot: C. sinensis v.1.0 Annotate VISTA Plot: Cacao v.1.0 Annotate VISTA Plot: Common bean v.1.0 Annotate VISTA Plot: Cotton v.2.0 Annotate VISTA Plot: E. grandis v.1.0 (dupl.) Annotate VISTA Plot: Flax v.1.0 Annotate VISTA Plot: M. esculenta v.4 Annotate VISTA Plot: M. guttatus v.1.0 Annotate VISTA Plot: M. truncatula release A17_3.5 Annotate VISTA Plot: Napa cabbage v.1.1 Annotate VISTA Plot: Peach v.1.0 Annotate VISTA Plot: Poplar v.3.0 Annotate VISTA Plot: Potato v.3.4 Annotate VISTA Plot: R. communis release 0.1 Annotate VISTA Plot: Rice v.7.0 Annotate VISTA Plot: Salt cress v.1.0 Annotate VISTA Plot: Shepherds purse v.1.0 Annotate VISTA Plot: Soybean Annotate VISTA Plot: Strawberry v.1.1 Annotate VISTA Plot: Tomato v.2.2 Annotate VISTA Plot: Wine grape Download Alignments Download Decorated FASTA File Download Sequence File

Data Source Aquilegia coerulea Arabidopsis lyrata Arabidopsis thaliana Brachypodium distachyon Brassica rapa Capsella rubella Carica papaya Chlamydomonas reinhardtii Citrus clementina Citrus sinensis Coccomyxa subellipsoidea C-169 Cucumis sativus Eucalyptus grandis Fragaria vesca Glycine max Gossypium raimondii Linum usitatissimum Malus domestica Manihot esculenta Medicago truncatula Micromonas pusilla CCMP1545 Micromonas pusilla RCC299 Mimulus guttatus v1.1 Mimulus guttatus v2.0 Oryza sativa Ostreococcus lucimarinus Panicum virgatum Phaseolus vulgaris Physcomitrella patens v1.6 Physcomitrella patens v3.0 Populus trichocarpa Prunus persica Ricinus communis Selaginella moellendorffii Setaria italica Solanum lycopersicum Solanum tuberosum Sorghum bicolor MIPS/JGI Sbi1.4 Thellungiella halophila Theobroma cacao Vitis vinifera Volvox carteri Zea mays

Scroll/Zoom:     Show 500 kbp Show 400 kbp Show 300 kbp Show 200 kbp Show 100 kbp Show 50 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1 kbp Show 200 bp Show 100 bp     Flip

 Overview

 Overview

 

Overview Scale

Collapse

Turn off

Share

Configure

Favorite

Download

About track

 Region

 Region

 

Region Scale

Collapse

Turn off

Share

Configure

Favorite

Download

About track

 Details

 Details

 

Detail Scale

Collapse

Turn off

Share

Configure

Favorite

Download

About track

Transcript

Transcript

Collapse

Turn off

Share

Configure

Favorite

Download

About track

Alt_transcript

Alt_transcript

Collapse

Turn off

Share

Configure

Favorite

Download

About track

PASA Assembled EST

PASA Assembled EST

Collapse

Turn off

Share

Configure

Favorite

Download

About track

BLASTX Plant Proteins

BLASTX Plant Proteins

Collapse

Turn off

Share

Configure

Favorite

Download

About track

BLATX Plant Proteins

BLATX Plant Proteins

Collapse

Turn off

Share

Configure

Favorite

Download

About track

Clear highlighting

<< Back to Browser Show Active Tracks Only Show Favorites Only Clear All Favorites

 Tracks

 Tracks

 

 Alignments

 Alignments

 All on All off 

BLASTX Plant Proteins [?]	PASA Aligned Sibling EST/cDNA [?]	RepeatMasker [?]
BLATX Plant Proteins [?]	PASA Assembled EST [?]
PASA Aligned EST/cDNA [?]	PASA Assembled Sibling EST [?]

 G7J1 Self Cross Sequencing Reads

 G7J1 Self Cross Sequencing Reads

 All on All off 

F1 Sibling Brasuz1 (Genomic) [?]	F1 Sibling s1c [?]	F1 Sibling s1g [?]
F1 Sibling s1a [?]	F1 Sibling s1e [?]	G7J1 (Parent) [?]
F1 Sibling s1b [?]	F1 Sibling s1f [?]

 General

 General

 All on All off 

6-frame translation [?]	Gaps [?]
DNA sequence/GC content (zoom in to 100bp)	UserBlast

 RNA-Seq

 RNA-Seq

 All on All off 

Eucspresso reads [?]

 SNPs

 SNPs

 All on All off 

Brasuz1 (Genomic Strain) SNPs [?]

 Transcripts

 Transcripts

 All on All off 

Alt_transcript [?]

Low-confidence Transcript [?]

Transcript [?]

 Analysis

 Analysis

 All on All off 

VISTA Plot: A. coerulea v.1.0	VISTA Plot: Strawberry v.1.1	VISTA Plot: Poplar v.3.0
VISTA Plot: A. lyrata v.1.0	VISTA Plot: Soybean	VISTA Plot: Common bean v.1.0
VISTA Plot: A. thaliana (TAIR9)	VISTA Plot: Cotton v.2.0	VISTA Plot: R. communis release 0.1
VISTA Plot: Napa cabbage v.1.1	VISTA Plot: Flax v.1.0	VISTA Plot: Tomato v.2.2
VISTA Plot: C. clementina v.1.0	VISTA Plot: Apple v.1.0	VISTA Plot: Potato v.3.4
VISTA Plot: C. papaya	VISTA Plot: M. esculenta v.4	VISTA Plot: Cacao v.1.0
VISTA Plot: Shepherds purse v.1.0	VISTA Plot: M. guttatus v.1.0	VISTA Plot: Salt cress v.1.0
VISTA Plot: C. sativus v.1	VISTA Plot: M. truncatula release A17_3.5	VISTA Plot: Wine grape
VISTA Plot: C. sinensis v.1.0	VISTA Plot: Rice v.7.0
VISTA Plot: E. grandis v.1.0 (dupl.)	VISTA Plot: Peach v.1.0

Snapshots

Snapshot Name

Snapshot Timestamp [GMT]

Custom Tracks

[Help with uploading custom tracks]

There are no tracks yet.

Add custom tracks : [From text] [From a URL] [From a file]

Show grid	Image Width 450 640 800 1024	Highlight feature(s) (feature1 feature2...) Clear highlighting
Cache tracks		Highlight regions (region1:start..end region2:start..end) Clear highlighting
Show tooltips		Region Size (bp) 200000 20000 10000 5000 1000

Generic Genome Browser version 2.52.
For questions about the data at this site or Gbrowse2 performance on Phytozome, please contact the Phytozome team at phytozome@jgi-psf.org or via our Contact page.
For general support of the browser software only, send email to gmod-gbrowse@lists.sourceforge.net or visit the GMOD Project web pages.